Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
EFL38840.1Transcriptional regulator. (185 aa)    
Predicted Functional Partners:
EFL38841.1
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.801
EFL38842.1
SMF protein.
       0.670
EFL42502.1
Membrane protein.
  
     0.634
EFL40211.1
Conserved hypothetical protein.
  
     0.632
EFL41324.1
Conserved hypothetical protein; Truncated CDS.
  
     0.614
EFL39215.1
Tetratricopeptide repeat-containing protein.
  
     0.598
EFL40333.1
Conserved hypothetical protein.
  
     0.593
EFL40210.1
Conserved hypothetical protein.
  
     0.577
EFL38843.1
Conserved hypothetical protein; Belongs to the UPF0102 family.
       0.552
EFL38844.1
CTP synthase.
       0.552
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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