STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38843.1Conserved hypothetical protein; Belongs to the UPF0102 family. (154 aa)    
Predicted Functional Partners:
EFL38844.1
CTP synthase.
       0.780
EFL38842.1
SMF protein.
 
  
 0.759
EFL38846.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
    0.740
EFL38845.1
MutT/nudix-family hydrolase; Belongs to the Nudix hydrolase family.
       0.734
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.699
EFL38847.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
  
    0.691
EFL38848.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
  
    0.691
EFL38849.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
  
    0.691
EFL38929.1
Sensory box/GGDEF domain/EAL domain-containing protein.
   
    0.655
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.636
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.