STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38855.1Conserved hypothetical protein. (199 aa)    
Predicted Functional Partners:
EFL38853.1
RNA-binding protein; Belongs to the UPF0109 family.
       0.731
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.731
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.689
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.689
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.655
EFL38847.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
       0.648
EFL38848.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
       0.648
EFL38849.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
       0.648
EFL38845.1
MutT/nudix-family hydrolase; Belongs to the Nudix hydrolase family.
       0.635
EFL38846.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.635
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.