Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38870.1Conserved hypothetical protein. (221 aa)    
Predicted Functional Partners:
EFL38871.1
MarR family transcriptional regulator.
       0.804
EFL37669.1
Conserved hypothetical protein.
  
     0.667
EFL41910.1
Branched chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
    
   0.615
EFL43119.1
Branched-chain amino acid ABC transport permease; Belongs to the binding-protein-dependent transport system permease family.
    
   0.615
EFL38864.1
Sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.552
EFL38867.1
Conserved hypothetical protein.
       0.552
EFL38868.1
Acylphosphatase.
       0.552
EFL38869.1
Hypothetical protein; Unextendable partial coding region.
       0.523
EFL37781.1
Conserved hypothetical protein.
   
    0.501
EFL37928.1
Conserved hypothetical protein.
   
    0.501
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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