STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38921.1Proline dehydrogenase. (308 aa)    
Predicted Functional Partners:
EFL38920.1
1-pyrroline-5-carboxylate dehydrogenase.
 0.961
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.936
EFL41895.1
Glutamate synthase large subunit.
  
 
 0.903
EFL40331.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
    
 0.862
EFL43279.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
    
 0.862
EFL37749.1
Proline racemase; Belongs to the proline racemase family.
    
 0.859
EFL41928.1
Proline iminopeptidase; Belongs to the peptidase S33 family.
     
 0.850
EFL42516.1
Hydantoinase/oxoprolinase.
    
  0.818
EFL37455.1
Carboxylate-amine ligase.
     
  0.807
EFL39508.1
Aldehyde dehydrogenase; Overlaps another CDS with the same product name.
 
 0.775
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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