Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL38952.1N-acetylmuramoyl-L-alanine amidase. (233 aa)    
Predicted Functional Partners:
mnmA
tRNA methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.783
EFL42489.1
Membrane protein.
 
     0.686
EFL39558.1
beta-N-Acetylglucosaminidase.
  
  
  0.574
xylB
Xylulokinase.
       0.552
EFL43298.1
Transcriptional regulatory protein.
       0.552
EFL41258.1
beta-N-Acetylglucosaminidase.
    
 0.509
EFL42667.1
Xylose repressor.
       0.506
EFL41109.1
beta-N-acetylhexosaminidase.
     
  0.500
EFL41228.1
Conserved hypothetical protein.
  
     0.447
EFL40151.1
NLP/P60-family secreted protein.
  
  
 0.411
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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