Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38960.1YghA protein. (218 aa)    
Predicted Functional Partners:
EFL38959.1
Conserved hypothetical protein.
       0.878
EFL38961.1
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.757
EFL38965.1
Oligopeptide/dipeptide ABC transporter, peptide-binding protein.
       0.687
EFL38963.1
ABC transporter, permease.
       0.573
EFL38957.1
Aminotransferase, class V.
       0.552
EFL38966.1
Conserved hypothetical protein.
       0.552
EFL38967.1
Conserved hypothetical protein.
       0.552
EFL39317.1
Oligopeptide ABC transporter, permease.
       0.552
EFL39318.1
ABC transporter lipoprotein.
       0.552
EFL38964.1
Dipeptide transport system permease DppB.
       0.543
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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