STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL38961.1Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (457 aa)    
Predicted Functional Partners:
EFL38963.1
ABC transporter, permease.
 
 0.987
EFL38964.1
Dipeptide transport system permease DppB.
 
 0.982
EFL38965.1
Oligopeptide/dipeptide ABC transporter, peptide-binding protein.
 
 
 0.960
EFL39317.1
Oligopeptide ABC transporter, permease.
 
 0.959
EFL39319.1
ABC transporter integral membrane protein.
 
 0.934
EFL42811.1
Oligopeptide/dipeptide ABC transporter, permease.
 
 0.929
EFL43421.1
Opine ABC transporter, permease.
 
 0.927
EFL39313.1
Peptide ABC transporter, permease.
 
 0.926
EFL38448.1
Peptide ABC transporter, permease.
 
 0.924
EFL39314.1
Peptide ABC transporter, permease.
 
 0.924
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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