Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38968.1ATP/GTP binding protein. (222 aa)    
Predicted Functional Partners:
EFL38967.1
Conserved hypothetical protein.
       0.793
EFL38966.1
Conserved hypothetical protein.
       0.680
EFL41925.1
Methyltransferase domain-containing protein.
 
 
   0.663
EFL41674.1
Conserved hypothetical protein.
  
     0.637
EFL41564.1
Membrane protein.
  
     0.633
EFL39542.1
Conserved hypothetical protein.
   
   0.607
EFL37328.1
Methyltransferase.
   
   0.603
EFL37460.1
Methyltransferase.
   
   0.603
EFL38476.1
Methyltransferase type 12.
   
   0.603
EFL38477.1
Conserved hypothetical protein.
   
   0.603
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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