Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38979.1Conserved hypothetical protein. (722 aa)    
Predicted Functional Partners:
EFL38980.1
Conserved hypothetical protein.
       0.765
EFL38981.1
Conserved hypothetical protein; Belongs to the WXG100 family.
       0.671
EFL41755.1
Transcription regulator.
  
  
 0.668
EFL38982.1
Conserved hypothetical protein.
       0.653
EFL42125.1
Membrane protein; Unextendable partial coding region.
  
  
 0.628
EFL43413.1
Integral membrane protein.
  
  
 0.628
EFL43286.1
Ankyrin repeat protein.
  
 
  0.479
EFL40523.1
Tetratricopeptide TPR_4.
  
 
  0.408
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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