Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL38984.1Secretion protein Snm4. (465 aa)    
Predicted Functional Partners:
EFL38983.1
Conserved hypothetical protein.
 
 
 
 0.952
EFL38985.1
FtsK/SpoIIIE family protein.
 
 
 0.934
EFL42789.1
FtsK/SpoIIIE family protein.
 
 
 0.902
EFL42791.1
Conserved hypothetical protein.
 
 
 
 0.834
EFL39973.1
Conserved hypothetical protein.
  
     0.639
EFL41091.1
Conserved hypothetical protein.
  
    0.605
EFL39854.1
Cell division protein.
  
 
 0.589
EFL40530.1
Conserved hypothetical protein.
  
 
 0.589
EFL40908.1
Conserved hypothetical protein.
  
 
 0.589
EFL41073.1
FHA domain-containing protein.
  
 
 0.588
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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