Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39037.1Helix-turn-helix domain-containing protein. (442 aa)    
Predicted Functional Partners:
EFL39036.1
Conserved hypothetical protein.
 
     0.938
EFL39038.1
Conserved hypothetical protein.
 
     0.582
EFL39441.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.562
EFL39163.1
Conserved hypothetical protein.
  
     0.549
EFL39035.1
Membrane protein.
       0.537
EFL39086.1
ATP synthase I.
  
     0.535
EFL38329.1
Periplasmic sensor signal transduction histidine kinase.
  
     0.509
EFL41456.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.493
EFL40019.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.480
EFL43031.1
Flavoprotein.
  
     0.479
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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