Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL39053.1methylmalonyl-CoA epimerase. (146 aa)    
Predicted Functional Partners:
EFL39603.1
B12-binding protein.
  
 0.997
EFL39496.1
propionyl-CoA carboxylase, beta subunit.
 
 
 0.988
EFL38911.1
methylmalonyl-CoA decarboxylase, alpha subunit.
 
 
 0.978
EFL38040.1
methylmalonyl-CoA mutase.
 
  
 0.976
EFL39549.1
methylmalonyl-CoA mutase.
 
  
 0.974
EFL39034.1
methylmalonyl-CoA mutase, subunit A 1.
 
  
 0.973
EFL39051.1
LAO/AO transport system ATPase.
 
  
  0.942
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
 0.875
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
    
 0.860
EFL37540.1
Condensation domain-containing protein.
    
 0.860
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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