Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39062.1Conserved hypothetical protein. (130 aa)    
Predicted Functional Partners:
EFL40057.1
ATP-binding protein.
 
     0.841
nucS
Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.749
EFL39061.1
Alkanal monooxygenase.
  
     0.646
EFL37357.1
Membrane protein.
  
     0.594
EFL41942.1
Toxin-antitoxin system, toxin component.
  
     0.584
EFL40021.1
Toxin-antitoxin system, toxin component.
  
     0.580
EFL37238.1
Conserved hypothetical protein.
  
     0.568
EFL43107.1
Toxin-antitoxin system, toxin component.
  
     0.500
EFL42182.1
ATPase.
  
     0.468
EFL37274.1
Transposase.
  
     0.446
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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