Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
EFL39068.1Zinc D-Ala-D-Ala carboxypeptidase. (231 aa)    
Predicted Functional Partners:
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.552
EFL40349.1
Metallo-beta-lactamase superfamily protein.
  
    0.542
EFL43509.1
Metallo-beta-lactamase superfamily protein.
  
    0.542
EFL37339.1
Metallo-beta-lactamase superfamily protein.
  
    0.527
EFL37663.1
Metallo-beta-lactamase superfamily protein.
  
    0.527
EFL38199.1
Beta-lactamase.
  
    0.527
EFL40069.1
Hydrolase.
  
    0.527
EFL40070.1
NUDIX family hydrolase.
  
    0.527
EFL41421.1
Metallo-beta-lactamase superfamily protein.
  
    0.527
EFL41960.1
Metallo-beta-lactamase superfamily protein.
  
    0.527
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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