STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39102.1ISMsm2, transposase; Truncated CDS. (194 aa)    
Predicted Functional Partners:
EFL37256.1
ISMsm2, transposase.
 
     0.796
EFL38107.1
Rhs element Vgr protein.
 
   0.647
EFL43259.1
Transposase; Truncated CDS.
  
 
   0.601
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.537
EFL38773.1
Transposase.
    
   0.533
EFL37316.1
IS4 family transposase.
  
     0.529
EFL37319.1
Transposase.
 
     0.511
EFL37272.1
ISL3 family transposase; Truncated CDS.
 
     0.463
EFL37268.1
ISMsm1, transposase; Truncated CDS.
 
     0.410
EFL39903.1
Transposase.
  
     0.403
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.