Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39109.1DEAD/DEAH box helicase. (1495 aa)    
Predicted Functional Partners:
EFL39113.1
DEAD/DEAH box helicase.
 
   
 0.956
EFL39114.1
Type III restriction enzyme, res subunit.
 
   
 0.951
EFL39107.1
Conserved hypothetical protein.
       0.878
EFL39108.1
Conserved hypothetical protein.
       0.874
EFL39111.1
Conserved hypothetical protein.
       0.838
EFL39112.1
Hypothetical protein.
       0.838
EFL39116.1
DGQHR domain-containing protein.
  
     0.774
EFL39118.1
DGQHR domain-containing protein.
  
     0.774
EFL39110.1
Hypothetical protein.
       0.764
EFL40844.1
Membrane protein.
  
     0.587
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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