Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL39122.1Queuosine biosynthesis protein QueD. (118 aa)    
Predicted Functional Partners:
queE
GntS family protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
 
 0.998
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
 
  
 0.992
EFL39123.1
Conserved hypothetical protein.
 
  
 0.964
folE
GTP cyclohydrolase I.
  
 
 0.940
EFL42596.1
Tat (twin-arginine translocation) pathway signal sequence domain-containing protein.
     
  0.828
EFL39118.1
DGQHR domain-containing protein.
 
     0.762
EFL39116.1
DGQHR domain-containing protein.
 
     0.730
EFL39117.1
Conserved hypothetical protein.
   
 
 0.717
EFL37604.1
Alkaline phosphatase D (APaseD).
     
  0.679
EFL41390.1
Phosphodiesterase/alkaline phosphatase D.
     
  0.679
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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