Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39132.1Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. (129 aa)    
Predicted Functional Partners:
EFL43034.1
Membrane protein.
 
 
 0.814
EFL37620.1
Integral membrane sensor protein.
 
 
 0.804
EFL38029.1
Integral membrane sensor protein.
 
 
 0.804
EFL38761.1
Regulatory protein.
 
 
 0.797
EFL42638.1
Integral membrane sensor protein.
 
 
 0.778
EFL39131.1
Conserved hypothetical protein.
  
 
 0.767
EFL40459.1
Conserved hypothetical protein.
 
 
 0.691
EFL41093.1
Conserved hypothetical protein.
 
 
 0.686
EFL38467.1
Conserved hypothetical protein.
 
 
 0.675
EFL40140.1
Regulatory protein.
 
 
 0.663
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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