STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39136.1GAF domain-containing protein. (539 aa)    
Predicted Functional Partners:
EFL39135.1
B12 binding domain-containing protein.
 
     0.946
EFL39134.1
Anti-sigma factor antagonist.
  
   0.869
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
 
 0.813
EFL37442.1
PAS/PAC sensor hybrid histidine kinase.
 
0.788
EFL37443.1
PAS/PAC sensor hybrid histidine kinase.
 0.788
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
 
 0.781
EFL37583.1
B12 binding domain-containing protein.
 
     0.759
EFL40046.1
anti-sigma-B factor antagonist (Anti-anti-sigma-B factor); Belongs to the anti-sigma-factor antagonist family.
 
   0.745
EFL37699.1
Stage II sporulation protein E (SpoIIE).
  
     0.744
EFL40991.1
Conserved hypothetical protein; Belongs to the anti-sigma-factor antagonist family.
 
   0.737
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.