Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL39155.1Membrane protein. (312 aa)    
Predicted Functional Partners:
EFL43276.1
phenylacetate-CoA oxygenase, PaaH subunit.
  
 0.824
EFL43231.1
ferredoxin-NADP reductase.
 
 
  0.783
EFL40331.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 0.720
EFL43279.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 0.720
EFL39156.1
TetR-family transcriptional regulator.
       0.710
EFL39154.1
Conserved hypothetical protein.
 
     0.559
EFL37848.1
Transcriptional regulator.
 
     0.555
EFL40886.1
Regulatory protein, MerR.
 
     0.526
EFL39029.1
Membrane protein.
  
     0.470
EFL40888.1
3-oxoacyl-[acyl carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.457
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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