Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39181.1Signal peptidase. (144 aa)    
Predicted Functional Partners:
EFL39182.1
Superoxide dismutase, Ni.
 
   
 0.950
EFL38061.1
Sialidase.
   
    0.582
EFL41218.1
Two component system histidine kinase.
  
     0.507
EFL42136.1
Conserved hypothetical protein.
  
     0.494
EFL41549.1
Secreted protein.
  
     0.459
EFL39183.1
AraC family transcriptional regulator.
       0.451
EFL41864.1
Membrane protein.
  
     0.451
EFL39185.1
Conserved hypothetical protein.
       0.442
EFL40980.1
Secreted protein; Unextendable partial coding region.
  
     0.440
EFL40306.1
DNA-binding protein.
  
  
 0.439
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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