STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39235.1Hypothetical protein; Pdz/dhr/glgf. (364 aa)    
Predicted Functional Partners:
EFL39236.1
Conserved hypothetical protein.
       0.770
EFL39239.1
Conserved hypothetical protein.
 
     0.745
EFL39237.1
Molybdopterin converting factor, subunit 2.
       0.693
EFL39238.1
Membrane protein.
       0.673
EFL39240.1
NUDIX hydrolase; Unextendable partial coding region.
       0.640
EFL41416.1
DNA polymerase III, delta subunit.
 
     0.614
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.541
whiB-7
Transcription factor WhiB family protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.538
EFL37203.1
Single-strand binding protein.
  
     0.506
whiB
Transcription factor WhiB family protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.500
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.