Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39275.1Conserved hypothetical protein. (305 aa)    
Predicted Functional Partners:
EFL37835.1
Transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.754
EFL40125.1
Conserved hypothetical protein.
  
     0.718
EFL40473.1
Conserved hypothetical protein.
  
     0.711
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.685
EFL39675.1
Membrane protein.
  
 
   0.660
EFL43102.1
Secreted protein.
  
     0.659
EFL37312.1
Secreted protein.
  
     0.647
EFL37568.1
UDP-glucose:polyglycerol phosphate glucosyltransferase.
  
 
   0.640
EFL38915.1
Membrane protein.
  
     0.623
EFL42307.1
Transcriptional regulator.
  
     0.623
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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