STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39280.1Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
EFL41863.1
ABC-2 type transporter.
  
     0.643
EFL42442.1
Secreted protein.
  
     0.625
EFL40182.1
Conserved hypothetical protein.
  
     0.609
EFL40582.1
Membrane protein; Overlaps another CDS with the same product name.
  
     0.563
EFL39276.1
Conserved hypothetical protein.
       0.552
EFL39277.1
Phosphoesterase PHP, N.
       0.552
EFL39278.1
Conserved hypothetical protein.
       0.552
EFL41326.1
Secreted protein.
  
     0.551
EFL42502.1
Membrane protein.
  
     0.543
EFL39215.1
Tetratricopeptide repeat-containing protein.
  
     0.533
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.