Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL39290.1Membrane protein. (317 aa)    
Predicted Functional Partners:
EFL39291.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.912
EFL38995.1
Conserved hypothetical protein.
  
     0.678
EFL40454.1
Integral membrane protein.
  
     0.672
EFL42624.1
Conserved hypothetical protein.
  
     0.667
tatB
Sec-independent protein translocase TatB-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
    0.650
EFL40020.1
Conserved hypothetical protein.
  
     0.649
EFL40786.1
Conserved hypothetical protein.
  
     0.629
EFL39245.1
Secreted protein.
  
    0.622
EFL38723.1
Conserved hypothetical protein.
  
     0.621
EFL38313.1
Phosphotransferase enzyme family protein.
  
     0.602
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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