Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL39314.1Peptide ABC transporter, permease. (307 aa)    
Predicted Functional Partners:
EFL39315.1
ABC-type oligopeptide transport system.
 
 0.998
EFL39313.1
Peptide ABC transporter, permease.
 0.997
EFL38065.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.991
EFL39312.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.991
EFL39311.1
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 
 0.989
EFL39319.1
ABC transporter integral membrane protein.
 0.974
EFL38631.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein.
 
 0.973
EFL39316.1
Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily.
 
 0.972
EFL38963.1
ABC transporter, permease.
 0.968
EFL38448.1
Peptide ABC transporter, permease.
 0.966
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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