Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL39316.1Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily. (372 aa)    
Predicted Functional Partners:
EFL39313.1
Peptide ABC transporter, permease.
 0.990
EFL38065.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.980
EFL39317.1
Oligopeptide ABC transporter, permease.
 
 0.978
EFL39314.1
Peptide ABC transporter, permease.
 
 0.972
EFL39319.1
ABC transporter integral membrane protein.
 0.971
EFL38963.1
ABC transporter, permease.
 0.968
EFL38964.1
Dipeptide transport system permease DppB.
 
 0.953
EFL39315.1
ABC-type oligopeptide transport system.
 
 
 0.953
EFL42811.1
Oligopeptide/dipeptide ABC transporter, permease.
 0.953
EFL43421.1
Opine ABC transporter, permease.
 0.952
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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