STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39317.1Oligopeptide ABC transporter, permease. (325 aa)    
Predicted Functional Partners:
EFL39318.1
ABC transporter lipoprotein.
 
 0.990
EFL39319.1
ABC transporter integral membrane protein.
 
 0.978
EFL38065.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.975
EFL39316.1
Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily.
 
 0.973
EFL38631.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein.
 
 
 0.967
EFL38963.1
ABC transporter, permease.
 
 0.967
EFL39313.1
Peptide ABC transporter, permease.
 
 0.963
EFL38961.1
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.959
EFL38448.1
Peptide ABC transporter, permease.
 
 0.953
EFL43421.1
Opine ABC transporter, permease.
 
 0.953
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.