STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39317.1Oligopeptide ABC transporter, permease. (325 aa)    
Predicted Functional Partners:
EFL38631.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein.
 
 0.993
EFL39318.1
ABC transporter lipoprotein.
 
 0.992
EFL39319.1
ABC transporter integral membrane protein.
 
 0.992
EFL38065.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
EFL38963.1
ABC transporter, permease.
 
 0.988
EFL39313.1
Peptide ABC transporter, permease.
 
 0.982
EFL38448.1
Peptide ABC transporter, permease.
 0.980
EFL43421.1
Opine ABC transporter, permease.
 
 0.980
EFL39315.1
ABC-type oligopeptide transport system.
 
 0.979
EFL39316.1
Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily.
 
 0.978
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.