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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39318.1ABC transporter lipoprotein. (600 aa)    
Predicted Functional Partners:
EFL39317.1
Oligopeptide ABC transporter, permease.
 
 0.990
EFL39319.1
ABC transporter integral membrane protein.
 
 0.983
EFL38963.1
ABC transporter, permease.
 
 0.945
EFL39313.1
Peptide ABC transporter, permease.
 
 0.938
EFL43421.1
Opine ABC transporter, permease.
 
 0.928
EFL38448.1
Peptide ABC transporter, permease.
 
 0.927
EFL42811.1
Oligopeptide/dipeptide ABC transporter, permease.
 
 0.926
EFL39316.1
Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily.
 
 0.912
EFL42812.1
ABC peptide transporter, permease component.
 
 0.901
EFL38961.1
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.899
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.