STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39319.1ABC transporter integral membrane protein. (348 aa)    
Predicted Functional Partners:
EFL39317.1
Oligopeptide ABC transporter, permease.
 
 0.992
EFL38631.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein.
 
 0.985
EFL39318.1
ABC transporter lipoprotein.
 
 0.984
EFL39314.1
Peptide ABC transporter, permease.
 0.974
EFL39316.1
Oligopeptide transport ATP-binding protein AppF; Truncated CDS; Belongs to the ABC transporter superfamily.
 0.971
EFL38064.1
ABC-type dipeptide/oligopeptide transport system, permease component.
 
 0.967
EFL38964.1
Dipeptide transport system permease DppB.
 0.967
EFL39311.1
Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily.
 0.966
EFL38449.1
Transport permease.
 
 0.965
EFL38546.1
Peptide/nickel/opine uptake family ABC transporter, permease.
 
 0.965
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.