Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFL37943.1 | EFL39320.1 | SSRG_00747 | SSRG_02124 | Translation elongation factor G; Overlaps another CDS with the same product name. | GTP-binding protein TypA; Truncated CDS. | 0.909 |
| EFL37943.1 | EFL39616.1 | SSRG_00747 | SSRG_02420 | Translation elongation factor G; Overlaps another CDS with the same product name. | GMP synthase. | 0.706 |
| EFL37943.1 | EFL39617.1 | SSRG_00747 | SSRG_02421 | Translation elongation factor G; Overlaps another CDS with the same product name. | GMP synthase domain-containing protein. | 0.706 |
| EFL37943.1 | EFL41895.1 | SSRG_00747 | SSRG_04699 | Translation elongation factor G; Overlaps another CDS with the same product name. | Glutamate synthase large subunit. | 0.733 |
| EFL37943.1 | infC | SSRG_00747 | SSRG_05103 | Translation elongation factor G; Overlaps another CDS with the same product name. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.869 |
| EFL37943.1 | rplA | SSRG_00747 | SSRG_02533 | Translation elongation factor G; Overlaps another CDS with the same product name. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.991 |
| EFL37943.1 | rpoB | SSRG_00747 | SSRG_02529 | Translation elongation factor G; Overlaps another CDS with the same product name. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
| EFL37943.1 | rpsI | SSRG_00747 | SSRG_02476 | Translation elongation factor G; Overlaps another CDS with the same product name. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.992 |
| EFL37943.1 | rpsJ | SSRG_00747 | SSRG_02510 | Translation elongation factor G; Overlaps another CDS with the same product name. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.993 |
| EFL37943.1 | tsf | SSRG_00747 | SSRG_01642 | Translation elongation factor G; Overlaps another CDS with the same product name. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.941 |
| EFL39320.1 | EFL37943.1 | SSRG_02124 | SSRG_00747 | GTP-binding protein TypA; Truncated CDS. | Translation elongation factor G; Overlaps another CDS with the same product name. | 0.909 |
| EFL39320.1 | EFL39616.1 | SSRG_02124 | SSRG_02420 | GTP-binding protein TypA; Truncated CDS. | GMP synthase. | 0.796 |
| EFL39320.1 | EFL39617.1 | SSRG_02124 | SSRG_02421 | GTP-binding protein TypA; Truncated CDS. | GMP synthase domain-containing protein. | 0.796 |
| EFL39320.1 | EFL41895.1 | SSRG_02124 | SSRG_04699 | GTP-binding protein TypA; Truncated CDS. | Glutamate synthase large subunit. | 0.759 |
| EFL39320.1 | infC | SSRG_02124 | SSRG_05103 | GTP-binding protein TypA; Truncated CDS. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.733 |
| EFL39320.1 | rplA | SSRG_02124 | SSRG_02533 | GTP-binding protein TypA; Truncated CDS. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.854 |
| EFL39320.1 | rpoB | SSRG_02124 | SSRG_02529 | GTP-binding protein TypA; Truncated CDS. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.737 |
| EFL39320.1 | rpsI | SSRG_02124 | SSRG_02476 | GTP-binding protein TypA; Truncated CDS. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.793 |
| EFL39320.1 | rpsJ | SSRG_02124 | SSRG_02510 | GTP-binding protein TypA; Truncated CDS. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.814 |
| EFL39320.1 | tsf | SSRG_02124 | SSRG_01642 | GTP-binding protein TypA; Truncated CDS. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.766 |
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