Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39335.1Peptidoglycan binding domain-containing protein. (223 aa)    
Predicted Functional Partners:
EFL38122.1
M23 peptidase domain-containing protein.
  
     0.728
EFL39781.1
Peptidase M23B.
  
     0.723
EFL38211.1
N-acetylmuramoyl-L-alanine amidase.
 
      0.710
EFL40170.1
M23/M37 family peptidase.
  
     0.703
EFL39334.1
Membrane protein.
       0.584
EFL40588.1
Secreted transglycosylase.
 
  
 0.523
EFL41596.1
Cell wall hydrolase/autolysin.
    
 0.457
EFL39068.1
Zinc D-Ala-D-Ala carboxypeptidase.
 
   
 0.450
EFL40399.1
Penicillin-binding protein.
  
  
 0.412
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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