Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39345.1MarR-family transcriptional regulator. (164 aa)    
Predicted Functional Partners:
EFL39344.1
Stage II sporulation protein E (SpoIIE).
 
    0.736
EFL37646.1
Anti-sigma B factor RsbT.
  
    0.550
EFL37481.1
PTS system, IIBC component.
     
 0.506
EFL43190.1
Transcriptional regulator.
  
     0.456
EFL39341.1
Anti-sigma B factor RsbT.
  
    0.455
EFL39342.1
Anti-sigma factor B antagonist.
  
    0.448
EFL39339.1
Stage II sporulation protein E (SpoIIE).
 
    0.422
EFL37802.1
Conserved hypothetical protein.
  
     0.414
EFL37297.1
IS4 family transposase.
  
     0.408
EFL39343.1
sigma-B regulator RsbR.
  
    0.408
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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