Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39346.1Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
EFL39728.1
Conserved hypothetical protein.
  
     0.722
EFL37350.1
Conserved hypothetical protein.
  
     0.672
EFL42529.1
MerR family transcriptional regulator.
  
     0.490
EFL41151.1
HNH endonuclease domain-containing protein; Overlaps another CDS with the same product name.
  
     0.471
EFL40386.1
GNAT family acetyltransferase.
  
     0.451
EFL42551.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.421
sti
Subtilase-type protease inhibitor; Strong inhibitor of bacterial serine proteases such as subtilisin.
  
     0.407
EFL41496.1
Conserved hypothetical protein.
  
     0.403
EFL40306.1
DNA-binding protein.
  
     0.401
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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