STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39400.1Secreted protein. (215 aa)    
Predicted Functional Partners:
EFL42012.1
Conserved hypothetical protein.
  
 0.907
EFL43447.1
Conserved hypothetical protein.
  
 0.907
EFL39401.1
Secreted protein.
       0.870
EFL39402.1
Secreted protein.
       0.870
EFL39403.1
Hypothetical protein.
       0.870
EFL41739.1
Peptidase.
    
 
 0.839
EFL39792.1
Membrane protein.
  
 
 0.798
EFL39404.1
Regulatory protein, LuxR:Response regulator receiver.
       0.779
EFL39405.1
Two-component system sensor kinase.
       0.740
EFL39412.1
Flp pilus assembly protein CpaB.
 
   
 0.740
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.