Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL39408.1Type II/IV secretion system protein. (445 aa)    
Predicted Functional Partners:
EFL39407.1
Integral membrane protein.
 
 
 0.998
EFL39406.1
Integral membrane protein.
 
 
 0.997
EFL39411.1
Septum site-determining protein; Truncated CDS.
 
 
 0.995
EFL39412.1
Flp pilus assembly protein CpaB.
 
 
 0.988
EFL40049.1
Integral membrane protein.
  
 
 0.951
EFL39837.1
Integral membrane protein; Overlaps another CDS with the same product name.
  
 
 0.903
EFL39836.1
Integral membrane protein; Overlaps another CDS with the same product name.
  
 
 0.892
EFL39409.1
Septum site-determining protein.
  
    0.868
EFL40053.1
Pilus assembly protein CpaF.
     
  0.850
EFL39410.1
Septum site-determining protein.
       0.786
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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