Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL39441.1Xre family toxin-antitoxin system, antitoxin component. (284 aa)    
Predicted Functional Partners:
EFL39440.1
Toxin-antitoxin system, toxin component.
 
     0.935
EFL39442.1
Hypothetical protein; Truncated CDS.
       0.775
EFL43107.1
Toxin-antitoxin system, toxin component.
  
     0.770
EFL41942.1
Toxin-antitoxin system, toxin component.
  
     0.767
EFL40021.1
Toxin-antitoxin system, toxin component.
  
     0.765
EFL37918.1
Conserved hypothetical protein.
  
     0.754
EFL39033.1
Conserved hypothetical protein.
  
     0.743
EFL39922.1
Conserved hypothetical protein.
  
     0.743
EFL41943.1
Conserved hypothetical protein.
  
     0.734
EFL39453.1
Conserved hypothetical protein.
  
     0.725
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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