Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39466.1Conserved hypothetical protein. (1490 aa)    
Predicted Functional Partners:
EFL39467.1
Conserved hypothetical protein.
 
     0.796
EFL42654.1
Conserved hypothetical protein.
  
     0.679
EFL42507.1
Major facilitator family transporter.
  
     0.593
EFL42935.1
Membrane protein.
  
     0.579
EFL39465.1
Translation initiation factor IF-2.
       0.573
EFL39468.1
Conserved hypothetical protein.
 
     0.571
EFL41868.1
Conserved hypothetical protein.
  
     0.571
EFL39464.1
dTMP kinase.
       0.556
EFL39481.1
Membrane protein.
  
     0.533
EFL40134.1
Secreted protein.
  
     0.528
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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