Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39489.1Membrane protein. (417 aa)    
Predicted Functional Partners:
EFL40065.1
Colicin V production protein.
  
     0.636
EFL38945.1
Methionine synthase, vitamin-B12 independent.
  
     0.632
EFL40618.1
Conserved hypothetical protein.
  
     0.604
EFL39077.1
Secreted/membrane protein.
  
     0.574
EFL40400.1
Integral membrane protein.
  
     0.558
EFL40054.1
Septum site determining protein.
  
     0.550
EFL39488.1
Integral membrane protein.
       0.539
EFL39491.1
Conserved hypothetical protein.
       0.516
EFL39490.1
LPXTG-domain-containing protein cell wall anchor domain-containing protein.
       0.437
EFL41739.1
Peptidase.
 
     0.432
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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