Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39526.1Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
EFL39527.1
Thymidine phosphorylase.
       0.773
EFL39154.1
Conserved hypothetical protein.
  
     0.717
EFL39528.1
Cytidine deaminase.
       0.712
EFL39529.1
Sugar ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.712
EFL39530.1
Sugar ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.712
EFL39531.1
ABC transporter, ATP-binding protein.
       0.712
EFL40099.1
Conserved hypothetical protein.
  
     0.566
EFL39524.1
Conserved hypothetical protein.
       0.552
EFL38433.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.509
EFL37923.1
Xre family toxin-antitoxin system, antitoxin component.
  
     0.506
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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