Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39535.1Conserved hypothetical protein. (354 aa)    
Predicted Functional Partners:
EFL39537.1
Transferase.
 
   
 0.973
EFL39538.1
Conserved hypothetical protein.
 
   
 0.966
EFL39536.1
Sialic acid synthase.
 
   
 0.948
EFL39540.1
Conserved hypothetical protein.
 
     0.858
EFL39544.1
Conserved hypothetical protein.
 
     0.823
EFL39539.1
Transferase.
 
     0.810
EFL42295.1
Conserved hypothetical protein.
  
     0.757
EFL39543.1
Transferase.
 
     0.725
EFL39534.1
ama/HipO/HyuC family hydrolase.
       0.715
EFL41392.1
Integral membrane protein.
  
     0.693
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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