Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39539.1Transferase. (328 aa)    
Predicted Functional Partners:
EFL39540.1
Conserved hypothetical protein.
 
     0.949
EFL39538.1
Conserved hypothetical protein.
 
   
 0.908
EFL39537.1
Transferase.
 
   
 0.888
EFL39544.1
Conserved hypothetical protein.
 
     0.859
EFL39536.1
Sialic acid synthase.
 
  
 0.826
EFL39535.1
Conserved hypothetical protein.
 
     0.810
EFL39542.1
Conserved hypothetical protein.
 
  
 0.613
EFL41298.1
Transferase.
 
  
 0.587
EFL41632.1
Dimodular nonribosomal peptide synthetase; Truncated CDS.
  
 
 0.575
EFL43486.1
Non-ribosomal peptide synthetase/polyketide synthase Ta1; Truncated CDS; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.567
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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