Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39542.1Conserved hypothetical protein. (734 aa)    
Predicted Functional Partners:
EFL39541.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
       0.878
EFL39537.1
Transferase.
 
     0.783
EFL42076.1
Magnesium chelatase.
  
 0.745
EFL38231.1
HAD-superfamily hydrolase subfamily IIIA; Truncated CDS.
  
 
 0.727
EFL38549.1
Glucosyltransferase.
  
  
 0.714
EFL41298.1
Transferase.
  
  
 0.714
EFL39543.1
Transferase.
 
  
 0.704
EFL39544.1
Conserved hypothetical protein.
 
     0.699
EFL39824.1
Integral membrane transferase.
     
 0.647
EFL39825.1
Glycosyl transferase, group 2.
     
 0.647
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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