Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39545.1Conserved hypothetical protein. (361 aa)    
Predicted Functional Partners:
EFL41895.1
Glutamate synthase large subunit.
     
  0.797
EFL40261.1
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.581
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.517
EFL40401.1
Alanine racemase domain-containing protein.
 
  
  0.491
EFL39546.1
Conserved hypothetical protein.
       0.485
EFL39543.1
Transferase.
  
    0.484
EFL39544.1
Conserved hypothetical protein.
       0.458
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
    
  0.444
EFL37540.1
Condensation domain-containing protein.
    
  0.444
EFL40291.1
Mucin-2.
 
     0.420
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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