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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39564.1Integral membrane protein. (135 aa)    
Predicted Functional Partners:
EFL39566.1
TetR family transcriptional regulator.
 
     0.897
EFL39565.1
Conserved hypothetical protein.
       0.870
EFL39563.1
Succinate dehydrogenase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.736
EFL39560.1
Succinate dehydrogenase, cytochrome b556 subunit.
       0.726
EFL39561.1
Succinate dehydrogenase, hydrophobic membrane anchor protein.
       0.726
EFL41173.1
Conserved hypothetical protein.
  
     0.612
EFL39548.1
Integral membrane protein.
       0.572
EFL40958.1
Integral membrane protein.
  
     0.532
EFL39562.1
Succinate dehydrogenase, flavoprotein subunit.
       0.510
EFL42886.1
Secreted alpha-amylase.
  
     0.478
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.