Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39566.1TetR family transcriptional regulator. (255 aa)    
Predicted Functional Partners:
EFL39564.1
Integral membrane protein.
 
     0.897
EFL39565.1
Conserved hypothetical protein.
       0.830
EFL39563.1
Succinate dehydrogenase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.701
EFL39560.1
Succinate dehydrogenase, cytochrome b556 subunit.
       0.692
EFL39561.1
Succinate dehydrogenase, hydrophobic membrane anchor protein.
       0.692
EFL39559.1
OHCU decarboxylase superfamily protein.
       0.646
EFL39548.1
Integral membrane protein.
       0.552
EFL39562.1
Succinate dehydrogenase, flavoprotein subunit.
       0.466
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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