Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39571.1Integral membrane protein; Overlaps another CDS with the same product name; Belongs to the UbiA prenyltransferase family. (308 aa)    
Predicted Functional Partners:
EFL39573.1
Oxidoreductase, FAD-binding.
 
  
 0.963
EFL39574.1
Short-chain dehydrogenase/reductase family oxidoreductase.
 
    0.943
EFL39572.1
PAP2 superfamily protein.
 
  
 0.920
EFL39569.1
Integral membrane protein; Overlaps another CDS with the same product name.
       0.878
EFL39570.1
Integral membrane protein; Overlaps another CDS with the same product name.
       0.878
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.781
EFL42076.1
Magnesium chelatase.
  
  
 0.710
EFL39874.1
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
    
 0.622
EFL39870.1
Aromatic acid decarboxylase.
    
 0.614
EFL38682.1
DNA gyrase, A subunit.
  
    0.599
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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