STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39572.1PAP2 superfamily protein. (175 aa)    
Predicted Functional Partners:
EFL39571.1
Integral membrane protein; Overlaps another CDS with the same product name; Belongs to the UbiA prenyltransferase family.
 
  
 0.920
EFL39569.1
Integral membrane protein; Overlaps another CDS with the same product name.
       0.878
EFL39570.1
Integral membrane protein; Overlaps another CDS with the same product name.
       0.878
EFL39573.1
Oxidoreductase, FAD-binding.
     
 0.780
EFL39574.1
Short-chain dehydrogenase/reductase family oxidoreductase.
     
 0.762
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.671
EFL40589.1
Integral membrane protein.
  
   
 0.663
EFL37503.1
PE-PGRS family protein; Belongs to the V-ATPase 116 kDa subunit family.
    
   0.630
EFL43486.1
Non-ribosomal peptide synthetase/polyketide synthase Ta1; Truncated CDS; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.591
EFL38549.1
Glucosyltransferase.
  
 
 0.570
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.