STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39583.1Glycine betaine-binding lipoprotein. (316 aa)    
Predicted Functional Partners:
EFL39584.1
Glycine betaine/L-proline ABC transporter, ATP-binding protein.
 
 0.995
EFL42283.1
Glycine betaine/L-proline ABC transporter, ATP-binding protein.
 
 0.992
EFL42284.1
Glycine betaine/proline ABC transporter, permease/substrate-binding protein.
 
 
0.990
EFL39585.1
Choline dehydrogenase.
 
   
 0.672
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
     
 0.601
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
     
  0.581
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.568
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
       0.552
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
   
    0.501
EFL40898.1
Cobalt ABC transporter, permease CbiQ.
  
  
  0.486
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.